Survival-associated eQTLs across different cancer types
We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
|
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
|---|---|---|---|---|---|---|---|---|---|
| THCA | rs1244505 | chr10:7873603 | G/A | 5.68E-6 | 487 | 16.07 | 16.05 | 15.5 | KM Plot |
| THCA | rs1244509 | chr10:7892324 | A/T | 0.000128 | 478 | 14.93 | 17.03 | 17.77 | KM Plot |
| THCA | rs1244511 | chr10:7895080 | A/G | 1.09E-5 | 475 | 15.17 | 16.05 | 15.5 | KM Plot |
| THCA | rs12446756 | chr16:19363574 | C/T | 1.96E-5 | 480 | 16.23 | 14.77 | 6.75 | KM Plot |
| THCA | rs12448655 | chr16:19353372 | G/A | 1.91E-5 | 485 | 16.23 | 14.55 | 12.57 | KM Plot |
| THCA | rs1245173 | chr12:65028300 | C/T | 0.000321 | 473 | 15.2 | 15.77 | 16.2 | KM Plot |
| THCA | rs12475073 | chr2:29174717 | C/G | 0.00011 | 490 | 14.3 | 15.22 | 16.07 | KM Plot |
| THCA | rs12481903 | chr21:37387002 | C/A | 2.97E-5 | 489 | 16.65 | 13.5 | 12.82 | KM Plot |
| THCA | rs12489687 | chr3:139264338 | A/C | 4.49E-6 | 489 | 15.9 | 16.93 | 14.53 | KM Plot |
| THCA | rs12491537 | chr3:155591078 | A/T | 0.000207 | 487 | 16.57 | 14.63 | 9 | KM Plot |
| THCA | rs12491908 | chr3:53937699 | G/A | 4.11E-15 | 489 | 15.9 | 17.23 | 10.35 | KM Plot |
| THCA | rs12493507 | chr3:139261618 | C/T | 4.39E-6 | 490 | 15.9 | 16.87 | 14.53 | KM Plot |
| THCA | rs12493592 | chr3:122109086 | C/T | 7.98E-7 | 487 | 16.37 | 15.7 | 5.93 | KM Plot |
| THCA | rs12496534 | chr3:53973124 | G/A | 0 | 484 | 15.83 | 17.68 | 6.03 | KM Plot |
| THCA | rs12500239 | chr4:110753218 | A/T | 5.24E-5 | 485 | 15.9 | 16.4 | 16.5 | KM Plot |